https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commits/2626e52496886bddfc38a803d387661c41c28c40
2023-10-03T11:01:17+08:00
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/2626e52496886bddfc38a803d387661c41c28c40
modified starsolo_10x_auto.sh in scripts
2023-10-03T11:01:17+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/415b6fe3480e589850287feb9aa4afbd99a97f60
modified starsolo_10x_auto.sh in scripts
2023-10-03T11:01:02+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/348612becb35e5f84de24608691eba7c84340d74
modified starsolo_10x_auto.sh in scripts
2023-09-20T14:24:40+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/8f5e44df607e378352f498d993df30ee14a9c8ed
modified starsolo_10x_auto.sh in scripts
2023-09-20T10:51:18+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/846e509a758f4ce6532b635d302c478ad934babc
update
2023-09-20T10:49:55+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/5a96cd747fea2b4834b8ecc71175656b25f3ad3c
update
2023-09-20T09:45:54+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/c93e41d3cc9eca6a929c7ac513df636656ba0240
update
2023-09-18T11:48:48+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/878abc15b65a8361ae7b23d347c3a8da984cc52c
update
2023-09-18T11:35:44+08:00
fc-ibb105
11653013@mail.sustech.edu.cn
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/958092b0d488b232c774a790e8b2cda9d65a6a8b
Updated README, removed cell filtering for plate-based methods
2023-06-28T11:58:31+01:00
Alexander Predeus
predeus@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/cc5707ef45e64889026bb7d513f2ef1d9bc50440
Fix the bug for gzipped Smart-seq input
2023-05-23T08:03:32+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/76628b3455ba171228ff079b35b821ce62686927
Typo fix
2023-03-24T11:06:19+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/30a869091fb6e7e713e5cb88f433ef4e601b9f46
UMILEN bug fix, BAM sorting updates, syntax updates
2023-03-24T10:43:45+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/4a9904514c5a8230b92112579a53267633758705
Remove the bulk RNA-seq processing section, update the README
2023-02-13T12:41:20+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/30afd0dcf874a16ddcdaa0c03495c02042a53087
Update Dockerfile
2023-02-06T17:56:06+00:00
Simon Murray
simondonaldmurray@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/a05879e1013b36db718e9be2964ced6992edf474
updated bbmap adapters path to cellgeni
2022-11-22T13:34:12+00:00
Simon
simondonaldmurray@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/6ac32b2bd01e40f3bd17f47677c1856ffff01787
updated starsolo revision which fixes malloc error
2022-11-18T13:18:22+00:00
Simon
simondonaldmurray@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/0fac63655d6535165277cd3e83f56c9f6a840aee
updated script paths for lustre migration
2022-11-17T11:01:36+00:00
Simon
simondonaldmurray@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/d856b486ef09dfd9ab5b5454afe6d20fc2a75e56
Fixed starsolo_10x_auto.sh to use GeneFull for strand estimation
2022-10-01T21:45:25+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/496171ab26171632b257c06c02996259bd10a2d1
solo_QC.sh now reports 10x whitelist version!
2022-08-19T23:23:49+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/0a1263b1a0d567dd760d35fbe8f567d52fcc8fee
Update solo_QC.sh - include species
2022-08-19T22:52:34+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/bc67b5d340988eb8583e36477b8f6cfedbb77267
Modified solo_QC.sh - now includes single-end/paired-end info
2022-08-19T17:31:07+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/024fe419f065c83f9f031e8f65488584c8e2950a
added samtools to path
2022-08-16T14:52:56+01:00
Simon Murray
simondonaldmurray@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/7b8968cd8f48ee9b0cbd9b89984e3038abca6661
added Dockerfile
2022-08-11T09:52:38+01:00
Simon
simondonaldmurray@gmail.com
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/4b445398661aa58687ade355c305e4147cd2a305
More updates and fixes - STAR v2.7.10a overhaul
2022-08-09T17:32:04+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/31ceff51e392c76ad9bd4897dbfd59028a36249e
Update to syntax & using STAR v2.7.10a
2022-08-09T13:36:33+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/8f5bda90d1d16e77a0accb2c39e97d0b999aff92
Update to fit STAR 2.7.10a
2022-05-16T10:49:00+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/605ae41c12968c4d8ccaf7da79f82e6c9947ad7c
New 10x processing scripts
2022-02-19T18:28:32+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/dfe40fa941fa4a2f8f14d9ebf576baae2944dc0f
QC script update
2022-01-17T18:28:13+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/11abf08298af42a17d4b9dd482f03f4b22ee7a32
Solo QC script update
2022-01-17T13:24:35+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/c3979aae648df0922b535f9bb553b70128190787
Syntax update
2022-01-14T23:15:44+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/70a0bb6398a1601ebfa231906780a1b9a38ee586
README update
2021-11-17T10:37:18+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/0693102e0a2ca5eb6736ea8f08dad10314275f33
README update
2021-11-17T10:35:22+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/7d501f74e640ff6df092d19cbb32c1eb9476eff3
README fixes
2021-11-17T09:27:29+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/2c0a94049c2e9c245fb8d944069cc6aa4644bfd7
Fixed script usage menus, added solo_QC.sh
2021-11-17T09:25:39+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/88a91ea7aca5bca734bd7ada4dd38164845ba89d
README fix
2021-11-09T15:27:29+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/a29d257cd4cfdf7fa2c76099b0433ac4241dc21b
Script structure changes & Smart-seq processing
2021-11-09T15:25:22+00:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/7485e90b9f06110c4287a38dffe7ab95930b31ec
Fixes!
2021-10-07T16:10:28+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/4915c939840d18678614fb41ec54d4cbf0bb0bb6
Fixes!
2021-10-06T21:15:07+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/20b97d40902807e8c44cb890fdd99bc07b111dde
Fixes!
2021-10-06T21:12:16+01:00
Alexander Predeus
ap41@sanger.ac.uk
https://mirrors.sustech.edu.cn/git/github_fork/STARsolo.script/-/commit/d3e75b9b6a81d2e106e4a07c67a14ef5addca012
Fixes!
2021-10-06T21:03:40+01:00
Alexander Predeus
ap41@sanger.ac.uk