lammps:f670dba3d019a8333de93c178da9c716a46db624 commits - 南方科技大学https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/f670dba3d019a8333de93c178da9c716a46db6242017-07-03T14:24:16-06:00https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f670dba3d019a8333de93c178da9c716a46db6243rd variant of Fortran wrapper for DFTB+ calling LAMMPS2017-07-03T14:24:16-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6fc0a94e87832e2b574132d198bd8455e1edcf9eMerge pull request #524 from martok/package-meamc2017-07-03T12:30:01-06:00sjplimpsjplimp@sandia.gov
Package USER-MEAMChttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5c0c8bb4cdbc5587e1e74c4c5eb2fc5963ac982dMerge pull request #558 from lammps/intel2017-07-03T12:25:12-06:00sjplimpsjplimp@sandia.gov
memory allocation bugfix for USER-INTEL pppm from M Brownhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9eeb97b039f729a74ebb32483ee5895e939cff21Merge pull request #544 from akohlmey/tip4p-triclinic2017-07-03T12:24:18-06:00sjplimpsjplimp@sandia.gov
Correct handling of triclinic box support in pppm/tip4p and pppm/tip4p/omphttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9ca9b5e2ffbd36034d64ae8a2e035583b3da0705add authors tag to pull request template2017-07-03T12:06:36-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/db73eca29f593d3ac1d3076e1ce958f9ca39c8b7correct example inputs for recent changes to create_bonds command2017-07-03T11:43:55-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2d1941ed9b16044d7a3960cae870847635fa1408make USER-INTEL compilable again with gcc and without OpenMP active2017-07-03T11:33:08-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e634c5a2dec82d15b420dea0d8b272b2742956f3memory allocation bugfix for USER-INTEL pppm from M Brown2017-07-03T08:53:53-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/22f3db47232193426c050d44b848e802e0394743remove some dead code and prune argument lists accordingly2017-07-01T18:16:36-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a1574fc03d87a4b5d1b6432b6085cf218a470340remove unused variables2017-07-01T17:55:13-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d68fb1cbb82d09bc1f91712c0db7bb92efa26089avoid repeated computation of deltaik and deltajk, calls to pow()2017-07-01T17:49:14-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/060e32973ef93ae7221f7651f29af70b0d8ef7deanother speedup by folding dsij() into meam_force()2017-07-01T17:07:56-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a4a15f24bdc14b41dd86f1871e1f4122b4327e67fold screen() function into getscreen() and avoid some repeated operations2017-06-30T18:44:51-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/883b7aaa0efc55a66903b9e89e3fb103d6b21c15Merge pull request #557 from lammps/create-bonds2017-06-30T14:18:15-06:00sjplimpsjplimp@sandia.gov
add single options to create_bonds commandhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1fff30af90e7809774cc832c0da89e515260eae9update or create example outputs for meam and meam/c2017-06-30T15:30:06-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a490e04d240285f11209c1e669dcaef0bae62eb0add backward compatibility item to pull request template2017-06-30T15:07:43-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b445f8eadf67e9ab9053da8389d95389a1ce3618spell-check new additions to create_bonds doc page2017-06-30T14:59:08-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b79044d4f60fe7523f858e08523d21ce8c4ffd6cMerge pull request #554 from jewettaij/master2017-06-30T11:47:46-06:00sjplimpsjplimp@sandia.gov
Have extra/XXX/per/atom set by keyword to the read_data commandhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/711afe5062ff3a88d7acd16022be424ab60f1edaadd single options to create_bonds command2017-06-30T11:30:43-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3bf2c602765fc680b69a1647899c43398bde7b99Merge pull request #553 from Pakketeretet2/USER-MANIFOLD-gaussian-bump2017-06-30T11:08:47-06:00sjplimpsjplimp@sandia.gov
Update to USER-MANIFOLD gaussian bumphttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d5119b2d753a10b3008eef9d4777c3ba8327348aMerge pull request #550 from stanmoore1/kokkos_leakfix2017-06-30T11:08:30-06:00sjplimpsjplimp@sandia.gov
Fix Memory Leak in Kokkos NeighListhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b2b621a2e18b62521972782e9bf01e0434188e9dMerge pull request #547 from akohlmey/collected-bugfixes2017-06-30T11:08:02-06:00sjplimpsjplimp@sandia.gov
Collected small bugfixes and updateshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b5250d11f63c02a0a11a6224efe4e12e3967d3e9Merge pull request #545 from akohlmey/issue-and-pull-request-templates2017-06-30T11:06:58-06:00sjplimpsjplimp@sandia.gov
Add folder .github containing administrative files for use with GitHubhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9dad95d101401f40a0019fa9155d1ceedde063c8performance improvement through moving inlinable functions to header file2017-06-30T13:04:09-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f6faad335cf5e4be18a410944c0de0d0ec71b3cbupdate documentation for nb3/harmonic pair style according to e-mail to lammp...2017-06-30T11:37:18-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/55487047006faad2c683c8561eb33b7a3e847050Move stateless functions to separate module, improve style2017-06-30T15:37:26+02:00Sebastian Hüttersebastian.huetter@ovgu.de
- use static/const
- return instead of ptr-parameter, &ref if more than one return
- replace macros from header with inline functions
- remove useless/old commentshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e0939ac795779600cfa28ed80f814911e1e64679Re-Run clang-format2017-06-30T12:28:22+02:00Sebastian Hüttersebastian.huetter@ovgu.dehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d5921e9fb9e8d231edefcab5b5cdbc9f413c47c7consolidate and update error message and read_data documentation for the upda...2017-06-29T16:30:49-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/aa3f4b76905bb014516b960bd2b68161d57ce2a9change the handling of reading "extra XXX per atom", so that the final choice...2017-06-29T16:09:23-04:00Axel Kohlmeyerakohlmey@gmail.comchange the handling of reading "extra XXX per atom", so that the final choice is the larger of the value in the file and the keyword
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/38075455b674d4d3d240d8a11db255f777bcb9e5new keywords for read_data: extra/X/per/atoms + changes to docs2017-06-28T17:55:30-07:00Andrew Jewettjewett.aij@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fa306354654255b118ce63109a82c00984d58224Revert "added feature to write_data.cpp to support "extra bonds"...2017-06-28T17:48:32-07:00Andrew Jewettjewett.aij@gmail.comRevert "added feature to write_data.cpp to support "extra bonds" (angles,dihedrals,impropers,special)."
This reverts commit <a href="/git/11930499/lammps/-/commit/0c2f7c74be34c4702ea4f9157e0ef04f3e03cdec" title='added feature to write_data.cpp to support "extra bonds" (angles,dihedrals,impropers,special).' class="gfm gfm-commit has-tooltip" data-original="0c2f7c74be34c4702ea4f9157e0ef04f3e03cdec" data-link="false" data-link-reference="false" data-commit="0c2f7c74be34c4702ea4f9157e0ef04f3e03cdec" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">0c2f7c74</a>.
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0c2f7c74be34c4702ea4f9157e0ef04f3e03cdecadded feature to write_data.cpp to support "extra bonds" (angles,dihedrals,im...2017-06-28T14:12:03-07:00Andrew Jewettjewett.aij@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/91bce7ccf95e2968a7f5e28e7bba2378dfea6e48Replaced std::fabs with fabs.2017-06-28T09:48:00-04:00Stefan Paquaystefanpaquay@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d0470799ac8b491b6e88179cd03554f875698b76consistently check for all per-atom-type masses being set only when per-atom ...2017-06-28T06:26:21-04:00Axel Kohlmeyerakohlmey@gmail.com
rather than placing an if statement around every incidence of calling atom->check_mass() to ensure it is only called when per atom masses are not set, we place that check _inside_ Atom::check_mass(). This avoids unexpected error messages.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/076990c28a6740d6b2a546b8942afc6d69b32a6fUpdated Gaussian bump so that it has a better taper function.2017-06-27T16:48:33-04:00Stefan Paquaystefanpaquay@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/661e51b6079cabf4341429cbb08244c2828dbd15remove non-ascii characters and spell check2017-06-27T00:38:53-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d076040471ca4033c804160aacabe7cdf5097807use itemized list instead of paragraphs for links at the top2017-06-27T00:24:04-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2f9c0a3b8efdd1e1ec09c7c5ccc4c25678a2e955more formatting issues addressed2017-06-27T00:23:10-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b9d213ee2bfb157dd94e1c0affae8bb33b0c79cfupdate formatting for contributing ToC2017-06-27T00:21:29-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fa3c7727e103a4628e8e12047c92132706b1c5d6contributing guidelines, issue and pull request template are now feature comp...2017-06-27T00:17:37-04:00Axel Kohlmeyerakohlmey@gmail.com
This is still a draft and in need of editing, proofreading and testing for formatting.