lammps:e634c5a2dec82d15b420dea0d8b272b2742956f3 commits - 南方科技大学https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/e634c5a2dec82d15b420dea0d8b272b2742956f32017-07-03T08:53:53-06:00https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e634c5a2dec82d15b420dea0d8b272b2742956f3memory allocation bugfix for USER-INTEL pppm from M Brown2017-07-03T08:53:53-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/883b7aaa0efc55a66903b9e89e3fb103d6b21c15Merge pull request #557 from lammps/create-bonds2017-06-30T14:18:15-06:00sjplimpsjplimp@sandia.gov
add single options to create_bonds commandhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a490e04d240285f11209c1e669dcaef0bae62eb0add backward compatibility item to pull request template2017-06-30T15:07:43-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b445f8eadf67e9ab9053da8389d95389a1ce3618spell-check new additions to create_bonds doc page2017-06-30T14:59:08-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b79044d4f60fe7523f858e08523d21ce8c4ffd6cMerge pull request #554 from jewettaij/master2017-06-30T11:47:46-06:00sjplimpsjplimp@sandia.gov
Have extra/XXX/per/atom set by keyword to the read_data commandhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/711afe5062ff3a88d7acd16022be424ab60f1edaadd single options to create_bonds command2017-06-30T11:30:43-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3bf2c602765fc680b69a1647899c43398bde7b99Merge pull request #553 from Pakketeretet2/USER-MANIFOLD-gaussian-bump2017-06-30T11:08:47-06:00sjplimpsjplimp@sandia.gov
Update to USER-MANIFOLD gaussian bumphttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d5119b2d753a10b3008eef9d4777c3ba8327348aMerge pull request #550 from stanmoore1/kokkos_leakfix2017-06-30T11:08:30-06:00sjplimpsjplimp@sandia.gov
Fix Memory Leak in Kokkos NeighListhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b2b621a2e18b62521972782e9bf01e0434188e9dMerge pull request #547 from akohlmey/collected-bugfixes2017-06-30T11:08:02-06:00sjplimpsjplimp@sandia.gov
Collected small bugfixes and updateshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b5250d11f63c02a0a11a6224efe4e12e3967d3e9Merge pull request #545 from akohlmey/issue-and-pull-request-templates2017-06-30T11:06:58-06:00sjplimpsjplimp@sandia.gov
Add folder .github containing administrative files for use with GitHubhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f6faad335cf5e4be18a410944c0de0d0ec71b3cbupdate documentation for nb3/harmonic pair style according to e-mail to lammp...2017-06-30T11:37:18-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d5921e9fb9e8d231edefcab5b5cdbc9f413c47c7consolidate and update error message and read_data documentation for the upda...2017-06-29T16:30:49-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/aa3f4b76905bb014516b960bd2b68161d57ce2a9change the handling of reading "extra XXX per atom", so that the final choice...2017-06-29T16:09:23-04:00Axel Kohlmeyerakohlmey@gmail.comchange the handling of reading "extra XXX per atom", so that the final choice is the larger of the value in the file and the keyword
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/38075455b674d4d3d240d8a11db255f777bcb9e5new keywords for read_data: extra/X/per/atoms + changes to docs2017-06-28T17:55:30-07:00Andrew Jewettjewett.aij@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fa306354654255b118ce63109a82c00984d58224Revert "added feature to write_data.cpp to support "extra bonds"...2017-06-28T17:48:32-07:00Andrew Jewettjewett.aij@gmail.comRevert "added feature to write_data.cpp to support "extra bonds" (angles,dihedrals,impropers,special)."
This reverts commit <a href="/git/11930499/lammps/-/commit/0c2f7c74be34c4702ea4f9157e0ef04f3e03cdec" title='added feature to write_data.cpp to support "extra bonds" (angles,dihedrals,impropers,special).' class="gfm gfm-commit has-tooltip" data-original="0c2f7c74be34c4702ea4f9157e0ef04f3e03cdec" data-link="false" data-link-reference="false" data-commit="0c2f7c74be34c4702ea4f9157e0ef04f3e03cdec" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">0c2f7c74</a>.
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0c2f7c74be34c4702ea4f9157e0ef04f3e03cdecadded feature to write_data.cpp to support "extra bonds" (angles,dihedrals,im...2017-06-28T14:12:03-07:00Andrew Jewettjewett.aij@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/91bce7ccf95e2968a7f5e28e7bba2378dfea6e48Replaced std::fabs with fabs.2017-06-28T09:48:00-04:00Stefan Paquaystefanpaquay@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d0470799ac8b491b6e88179cd03554f875698b76consistently check for all per-atom-type masses being set only when per-atom ...2017-06-28T06:26:21-04:00Axel Kohlmeyerakohlmey@gmail.com
rather than placing an if statement around every incidence of calling atom->check_mass() to ensure it is only called when per atom masses are not set, we place that check _inside_ Atom::check_mass(). This avoids unexpected error messages.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/076990c28a6740d6b2a546b8942afc6d69b32a6fUpdated Gaussian bump so that it has a better taper function.2017-06-27T16:48:33-04:00Stefan Paquaystefanpaquay@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/661e51b6079cabf4341429cbb08244c2828dbd15remove non-ascii characters and spell check2017-06-27T00:38:53-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d076040471ca4033c804160aacabe7cdf5097807use itemized list instead of paragraphs for links at the top2017-06-27T00:24:04-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2f9c0a3b8efdd1e1ec09c7c5ccc4c25678a2e955more formatting issues addressed2017-06-27T00:23:10-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b9d213ee2bfb157dd94e1c0affae8bb33b0c79cfupdate formatting for contributing ToC2017-06-27T00:21:29-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fa3c7727e103a4628e8e12047c92132706b1c5d6contributing guidelines, issue and pull request template are now feature comp...2017-06-27T00:17:37-04:00Axel Kohlmeyerakohlmey@gmail.com
This is still a draft and in need of editing, proofreading and testing for formatting.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9fec8a0470bd2b3ce1ad9993c4652678072a20c1Remove clean_copy function from pair_vashishta_kokkos2017-06-26T10:56:03-06:00Stan Moorestamoor@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b8897765572e454ace662b80e1e87d115a244579Fixing memory leak in Kokkos neighborlist2017-06-26T10:51:26-06:00Stan Moorestamoor@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f7077d96726ee68d3b3ff0fa37412ff6bde54365Merge branch 'collected-bugfixes' of github.com:akohlmey/lammps into collecte...2017-06-26T11:27:31-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f89a7266bfefc08490179aa05ac5cd0e8c4b860bmake USER-INTEL compilable again with gcc and without OpenMP active2017-06-25T23:57:42-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/125795566234964d57072b9e28d78939e58b836aMerge branch 'master' of https://www.github.com/lammps/lammps2017-06-23T19:31:43-04:00Stefan Paquaystefanpaquay@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1370385c8c9f6879e538e2aeaf39ee69f3131ab7patch 23Jun172017-06-23T17:10:59-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2240c3d7d3a858a2aab5512bc2deee432205074eMerge pull request #548 from lammps/doc-update2017-06-23T16:48:37-06:00sjplimpsjplimp@sandia.gov
doc page clarifications for CHARMM energy and dipole pre-factorshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4fcbd58d5a32656bd4fedd7b1ac486b5b6b8f137doc page clarifications for CHARMM energy and dipole pre-factors2017-06-23T15:54:14-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c2c6dc14588a8aafe95fde74bbc0ae8c3db0d043remove spurious comment line2017-06-23T16:24:37-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/18983c307e96b0c0c8c07f954c999244156651bbfix qeq/reax/omp bugfix from metin2017-06-23T16:24:00-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/25a5d12af38656ca91ca05942f5d891ec7b13b12Merge pull request #541 from lammps/charmm2017-06-23T09:10:04-06:00sjplimpsjplimp@sandia.gov
use CHARMM energy conversion factor with new CHARMM pair styleshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/05fbf93455189f5eaac373cf52b32a7feb56f7d2skip deleting internal data before setup has been run2017-06-23T10:37:00-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/374eef2b175259701985446852c6de1d53475547add first draft of issue template2017-06-23T01:13:10-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/dc7243838b8c973d3b089880c8ea1b03154c90dbfirst draft of a contributor's guide file2017-06-23T00:54:20-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/57d5cfede3910dbb03fc47062efaae3c78d5db81add first draft of a pull request template2017-06-22T23:07:09-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/feb500b52684965dd398acd80e78de35188f1d4areword the kspace_modify fftbench keyword docs to reflect the current state...2017-06-22T19:17:41-04:00Axel Kohlmeyerakohlmey@gmail.comreword the kspace_modify fftbench keyword docs to reflect the current state (i.e. off by default) of code