lammps:cebf6d33baa3c4b8f75fd76afabb553ae5b735be commits - 南方科技大学https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/cebf6d33baa3c4b8f75fd76afabb553ae5b735be2020-09-15T17:41:24-04:00https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/cebf6d33baa3c4b8f75fd76afabb553ae5b735beMerge pull request #2358 from eagunn/iss23452020-09-15T17:41:24-04:00Axel Kohlmeyerakohlmey@gmail.com
Replace instances of NULL with nullptrhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f481a403bcdbb96f67970fc18bc8b199f8e0028bMerge pull request #2366 from akohlmey/msm-fix2020-09-15T16:22:19-04:00Axel Kohlmeyerakohlmey@gmail.com
Apply alternate bugfix to KSpace style MSM that avoids grid level overflowhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3dd3c6a2a56f5f69781bd2091cf377d572c71621redo fix for class member shadowing while avoiding overflowing levels2020-09-15T14:48:55-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/16749566f8a6b16450d11dcf5cf74c7538fc082aRevert "fix issue with local variable shadowing a global variable"2020-09-15T14:42:00-04:00Axel Kohlmeyerakohlmey@gmail.com
This reverts commit <a href="/git/11930499/lammps/-/commit/3368eb79d843265d1a35570fb4f9965beae5de22" title="fix issue with local variable shadowing a global variable" class="gfm gfm-commit has-tooltip" data-original="3368eb79d843265d1a35570fb4f9965beae5de22" data-link="false" data-link-reference="false" data-commit="3368eb79d843265d1a35570fb4f9965beae5de22" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">3368eb79</a>.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2165f6ed385af2a97d2b3cb448d3ad1ed013871cMerge pull request #2363 from akohlmey/consistent-memory-usage2020-09-15T14:21:07-04:00Axel Kohlmeyerakohlmey@gmail.com
Make memory usage reporting consistenthttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/baa49984c25765a35d43b45a43f34752ace0b8a2update comments2020-09-15T14:19:40-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/326d9f398c449ff6ef97019e3b57af8eca00ae91Merge branch 'master' into iss23452020-09-15T14:06:16-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5cbb54b8446e03d8ab812cd8d3e564d798681041Merge branch 'iss2345' of github.com:eagunn/lammps into iss23452020-09-15T14:04:16-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b5832191d8dff8e2e3e2b8caf05a8cc1cb5930b8Merge pull request #2364 from akohlmey/force-test-bugfix2020-09-15T13:40:13-04:00Axel Kohlmeyerakohlmey@gmail.com
Force style unit test template bugfixhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5da50d64c920a80454f0b3d7bf59615fb515e074reformulate2020-09-15T12:32:43-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2f3c916a573e8dc1e29717362c527ee8b349aa3aadd unit test for lammps_memory_usage()2020-09-15T12:29:03-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/35764642682178891f022f46ffa26f393d634d37Merge branch 'master' into consistent-memory-usage2020-09-15T12:25:16-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/165444004e76c6a30404f640ba7f6004026bad62Merge pull request #2362 from akohlmey/library-progguide2020-09-15T11:51:02-04:00Axel Kohlmeyerakohlmey@gmail.com
Updates to C-Library interface progammer guide and referencehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c6bc21febf0b2fb0cf2c93681001ca239e7228cdMerge pull request #2361 from akohlmey/collected-small-changes2020-09-15T11:28:25-04:00Axel Kohlmeyerakohlmey@gmail.com
Collected small changes for the next patch releasehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2f3c73217b0a78e23f843a984cbb6f67d02f8993detect if dt has been changed from default and print warning if reset by unit...2020-09-15T10:50:44-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e30864431f484409822d92f373e12df22786a3d5add test for missing quartic bond style2020-09-15T10:12:18-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/27941088370236fa0e88baf48d29021168983c3cdon't update per-atom pair data if not available2020-09-15T10:12:07-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/238730b13dd819ebad57f417677d7f6d1753eb09update epsilon2020-09-15T09:55:58-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c6b6369d2ddac532cd0ee1cdce48dbc158cdf383fix bug in input script templates that would have the timestep setting...2020-09-15T09:46:57-04:00Axel Kohlmeyerakohlmey@gmail.comfix bug in input script templates that would have the timestep setting overwritten by a units command
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/bb76215ef0468aa866fde3835ebf6bcc6424f210add library interface to retrieve memory usage info2020-09-15T01:59:58-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4b64be77e0adb06211f288457afd82d22184429cconsolidate memory allocation information into a single function (in Info)2020-09-15T01:59:58-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0183e999c9b91c5a13f2d86b663346a006b81e3bconsistently return "memory_usage" as double.2020-09-15T01:59:58-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/39681acfa40758c1c6cc328fb7dad009f00af10cadd cross reference2020-09-14T21:03:39-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d27d4912af06a9d0106e99edc77910060d09f1datest lammps_extract_settings()2020-09-14T20:53:19-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1e54a9fcf1f4bb4271b854b6b30521f5414947b4complete tests for extracting and resetting the box2020-09-14T20:27:29-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5c7f67201be78b5169a3a93b36f577b12315df2amake naming more consistent2020-09-14T20:27:10-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/93bd851ab02d7e7d832f7e21e924620857d22b12fix typo2020-09-14T17:39:31-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/df9f0e244b15019181182e1c9e7c702071751a41add false positive2020-09-14T17:18:14-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5634dd4394b507df889d6c56b05178a4829bc67fcorrect formatting of examples2020-09-14T17:15:53-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b1e0990c46a91be3d98702e2ca0c249d0f9d1fbeupdate lammps config settings calls example2020-09-14T17:11:27-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f70717710e40a85d35775f05ba1ac5f7d7711971fix for zstd support. add styles to list at top and document .zst extension r...2020-09-14T17:07:09-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a1b2f821079a515ea8d35a4bc1193910abd136dctest for exceptions add example2020-09-14T17:01:28-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4185608e9249de7a7283e930979ac50bbfb9951acomplete testing for LAMMPS configuration queries2020-09-14T14:56:56-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b4558124344d756946d79ae0949a5355e1574b01more tests for properties and configuration2020-09-14T14:25:17-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f5e98045576593076e3e81b8d4bfe3efdcb86fe4cosmetic2020-09-14T14:24:34-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6315b277c8798fbce824004b115c70819de459c9Revert commit 14dfd3876ac4a53855804baa7f27abfb6a1a9d46 which walked-back2020-09-14T12:05:46-06:00Anne Gunnagunn@sherprog.comthe NULL->nullptr changes for lib/awpmd.
Then, hand-applied a minor cleanup to comments, ala Axel's changes to the
rest of the codebase.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/430d1516603644cc74ea48246302ae02058db148Revert commit 05d41cd50de992fe806e4f4a3d8b42b6e39579a4 which walked-back2020-09-14T12:05:46-06:00Anne Gunnagunn@sherprog.comthe NULL->nullptr changes for lib/poems.
Then, hand-applied a minor cleanup to comments, ala Axel's changes to the
rest of the codebase.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/58a17532bf11c2eacc5464b40dc83566aebd3ad5fix up some comments2020-09-14T12:05:45-06:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ec1fe4e445b777138a1778a9a2a2e5861c2c5120update molfile plugin headers with latest versions from VMD2020-09-14T12:05:45-06:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a57a5c76a5be1b35a8634b5e58d8fbe0a701332aT2345: After examining comments changed by batch conversion of NULL2020-09-14T12:05:45-06:00Anne Gunnagunn@sherprog.comto nullptr, I've corrected a small number where it seemed clear
that the previous NULL should have been either "NULL" (where the
code is looking for a string with that value), or null char / null byte
(where the comment is talking about the char/byte that terminates
a c-style string).
Also changed 6 places where the batch change had changed 'NULL ptr'
to 'nullptr ptr'. Now they simply say 'nullptr'.