lammps:a7ad12491f3ec8ce73e5fc0db20062f859809d13 commits - 南方科技大学https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/a7ad12491f3ec8ce73e5fc0db20062f859809d132017-10-21T16:12:23-06:00https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a7ad12491f3ec8ce73e5fc0db20062f859809d13Merge pull request #706 from lammps/doc-cs2017-10-21T16:12:23-06:00Steve Plimptonsjplimp@sandia.gov
update to doc pages for new coreshell pair styleshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2137be32197a255c031a0a88c2b222bc6227a51dupdate to doc pages for new coreshell pair styles2017-10-21T15:50:27-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ce78f6943d5986db5a8079d44ccd98cf6e9e4e82Merge pull request #705 from akohlmey/fix_rigid_bugfix2017-10-20T17:01:50-06:00Steve Plimptonsjplimp@sandia.gov
fix segfault bug in fix rigid/small found by regression testinghttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/998aedc6c14201fa14d7dbf9ae9c9c548c41e062Merge pull request #670 from vishalkenchan/pair_style/coul_wolf_cs2017-10-20T16:09:33-06:00Steve Plimptonsjplimp@sandia.gov
add coul/wolf/cs and born/coul/wolf/cs pair styles for CORESHELL packagehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0a02c3c78c6034408097122812181ed603cbe1c9fix segfault bug for in fix rigid/small found by regression testing2017-10-20T16:56:06-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/aaf5e87c84f5747b86f0db0787e1de1211afe414Merge pull request #703 from akohlmey/custom-rigid-body-generation2017-10-20T14:08:15-06:00Steve Plimptonsjplimp@sandia.gov
Allow rigid body generation from custom propertieshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2d0f5e277cf134c05258a769dc0f324e07a6c27cMerge pull request #704 from akohlmey/bond-gromos-bugfix2017-10-20T14:06:35-06:00Steve Plimptonsjplimp@sandia.gov
Compute energy correctly for bond style gromoshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/260bbc6f9fea10f7cc215f059f36ff54b1d651e3Merge pull request #702 from giacomofiorin/colvars-fix-the-fix2017-10-20T14:06:15-06:00Steve Plimptonsjplimp@sandia.gov
Fix a Colvars error that was hidden by the previous segfaulthttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6b34a305286f2302b1cc263a4101289070f8c3f0compute energy correctly for bond style gromos2017-10-20T14:53:22-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/83c7d3a1d2e64ef5dfa14515ac6c596b1ad7627eupdate fix rigid documentation2017-10-20T14:18:50-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/961b97637479837393a95e5146eb43012cf811c7add/correct code to define rigid bodies with atomstyle/atomfile variables and...2017-10-20T13:56:09-04:00Axel Kohlmeyerakohlmey@gmail.comadd/correct code to define rigid bodies with atomstyle/atomfile variables and via custom per-atom properties
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ac6434e4968181ca458349466e46bf1cfa0fa7edadd input examples for custom rigid body definition2017-10-20T13:54:45-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f479f025897dcdad50ea4f488908a92062dfe5d9Fix a Colvars error that was hidden by the previous segfault2017-10-20T13:41:31-04:00Giacomo Fioringiacomo.fiorin@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e284545c5b996596cb49e03b8f5cd6c6c3604b8aadded some documentation and reference example2017-10-20T12:03:22+02:00vishalkenchanvishal.boddu@fau.dehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e368acdaeb2251d28d7ff14b68d6b99e527fe817Merge pull request #700 from giacomofiorin/colvars-fix2017-10-19T11:45:36-06:00Steve Plimptonsjplimp@sandia.gov
Import segfault fix in Colvars modulehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6e7504f15328576112eb80f26e68a31945e429aaImport segfault fix in Colvars module2017-10-19T08:09:44-04:00Giacomo Fioringiacomo.fiorin@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/71c4edda51da7a11287eab3ccb48ef2a00c6bfb9add coul/wolf/cs and born/coul/wolf/cs pair styles for CORESHELL package2017-10-19T13:21:13+02:00vishalkenchanvishal.boddu@fau.dehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/40147a7a64f781e12f2517caf8241bdd1b1e8767Merge pull request #699 from lammps/doc-update22017-10-18T16:44:18-06:00Steve Plimptonsjplimp@sandia.gov
cross ref fix deform and new fix nvt/uef in doc pageshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f709a723cd9747ff3d70d20d0931685bf974530dcross ref fix deform and new fix nvt/uef2017-10-18T15:26:15-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6dd55e49cbc458237ed056b8e2ab1bddfa1644b3Merge pull request #698 from lammps/doc-update2017-10-18T15:24:54-06:00Steve Plimptonsjplimp@sandia.gov
small updates to recently added docs and rename of an example dirhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/281b1dc375712876d469dbbd0f1431d198120b55small updates to recently added docs and rename of an example dir2017-10-18T14:56:47-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e93f8f88897552ca93f58907ca326065f0e13b4bMerge pull request #671 from danicholson/user-uef2017-10-18T13:38:56-06:00Steve Plimptonsjplimp@sandia.gov
USER-UEF package for extensional flowhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/35f2cfa0bfafa064325a3eb8acc86d3627c6a33aMerge pull request #669 from urpedersen/master2017-10-18T13:31:15-06:00Steve Plimptonsjplimp@sandia.gov
fix rhok - biasing long-range orderhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e44196c01133ab7b8a5b43de2b2770c3d069f391Merge pull request #694 from akohlmey/bond-gromos2017-10-18T13:27:15-06:00Steve Plimptonsjplimp@sandia.gov
Add gromos bond stylehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2fe1d1b904516fe8045fede5fc00f182ff459229Merge pull request #697 from andeplane/fix_heat_bug2017-10-18T13:26:19-06:00Steve Plimptonsjplimp@sandia.gov
Avoid checking region when not specifiedhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b1b4a52b14e255597d8af2237dc44fa9056ec950Merge pull request #695 from timattox/USER-DPD_small_updates2017-10-18T13:25:48-06:00Steve Plimptonsjplimp@sandia.gov
USER-DPD small updateshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/382de50341882991323b8b148a93a7a41f5e635cMerge pull request #696 from wmbrownIntel/intel-update-oct172017-10-18T13:25:07-06:00Steve Plimptonsjplimp@sandia.gov
Bug fix for unexpected case where a Intel bonded style is specified but there are no typeshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7dfc6b7eab71b3e073e13e02b162c1d5f89d1eccMerge pull request #688 from lammps/history2017-10-18T13:24:36-06:00Steve Plimptonsjplimp@sandia.gov
refactoring of neighbor historyhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/19eb5d389778f0137e4ad09d82318f90614f4540Avoid checking region when not specified2017-10-18T18:05:34+02:00Anders Hafreagerandershaf@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/17c17ac4099687e0766cefb1b655547307c4eea6update multi-threaded neighbor list build for neighbor list refactor2017-10-18T11:25:15-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/39ededd46cf7f4621fd584a37bdc77d8fd39dbe9update respa/omp integrator style for neighbor list refactor2017-10-18T11:24:44-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2c7528811d7f26ff1d256c59e8dca831946249adupdate several pair styles to be compliant with refactored respa lists data s...2017-10-18T11:24:12-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0966e14e73a74327f116ab4ab90cf2d69dd2d1fdmore changes to rRESPA neighbor lists2017-10-17T17:33:01-06:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/bb141aaae04fd9cea31132725cb64d5709a16964USER-INTEL: Bug fix for case where a bond/angle/dihedral/improper style is...2017-10-16T22:51:56-07:00Michael Brownmichael.w.brown@intel.comUSER-INTEL: Bug fix for case where a bond/angle/dihedral/improper style is specified, but there are no bond/... types and therefore no allocation.
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/374d619769c2de72953a1786d9512ad1410395c9add gromos bond style2017-10-16T14:57:12-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/59de1a71c8cd2a8d31067afb1f5dcca95d47c7f0Merge branch 'history' of github.com:lammps/lammps into history2017-10-16T14:37:30-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4c6779cb0d61c7db56c2cd6573554d1dbf82140dUSER-DPD Kokkos: propagate the new neigh_modify options from efaa4c672017-10-16T13:37:27-05:00Tim Mattoxtimothy.mattox@engilitycorp.com
Propogate the <a href="/git/11930499/lammps/-/commit/efaa4c67109fb75e03699d2d7294005810fb776e" title="new neigh_modify exclude option, other SNAP changes" class="gfm gfm-commit has-tooltip" data-original="efaa4c67" data-link="false" data-link-reference="false" data-commit="efaa4c67109fb75e03699d2d7294005810fb776e" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">efaa4c67</a> changes to npair_ssa_kokkos from npair_kokkos that
support the new neigh_modify exclude molecule/intra and /inter options.
Note: npair_ssa_kokkos could inherit from npair_kokkos to avoid this kind
of missed change. Unfortunately, inheritance from templated classes is
both tricky and messy, and not worth the complexity in this case, IMHO.https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5fb5f70ec6847f971bcf74d40022a4f6cd4396acupdate USER-OMP code for shear history neighbor refactoring2017-10-16T14:37:20-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b0bba1976b33609f163b79e515c79bccdfa7f0e7USER-DPD: remove unused coord2bin() variants, and add ISFINITE checks2017-10-16T13:36:44-05:00Tim Mattoxtimothy.mattox@engilitycorp.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f8f13d929fadcc2d4ec6bf38d86374821bfbd16aMerge pull request #693 from giacomofiorin/colvars-update2017-10-13T17:25:06-06:00Steve Plimptonsjplimp@sandia.gov
Update Colvars to version 2017-10-11