lammps:a7ad12491f3ec8ce73e5fc0db20062f859809d13 commits - 南方科技大学 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/a7ad12491f3ec8ce73e5fc0db20062f859809d13 2017-10-21T16:12:23-06:00 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a7ad12491f3ec8ce73e5fc0db20062f859809d13 Merge pull request #706 from lammps/doc-cs 2017-10-21T16:12:23-06:00 Steve Plimpton sjplimp@sandia.gov update to doc pages for new coreshell pair styles https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2137be32197a255c031a0a88c2b222bc6227a51d update to doc pages for new coreshell pair styles 2017-10-21T15:50:27-06:00 Steve Plimpton sjplimp@sandia.gov https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ce78f6943d5986db5a8079d44ccd98cf6e9e4e82 Merge pull request #705 from akohlmey/fix_rigid_bugfix 2017-10-20T17:01:50-06:00 Steve Plimpton sjplimp@sandia.gov fix segfault bug in fix rigid/small found by regression testing https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/998aedc6c14201fa14d7dbf9ae9c9c548c41e062 Merge pull request #670 from vishalkenchan/pair_style/coul_wolf_cs 2017-10-20T16:09:33-06:00 Steve Plimpton sjplimp@sandia.gov add coul/wolf/cs and born/coul/wolf/cs pair styles for CORESHELL package https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0a02c3c78c6034408097122812181ed603cbe1c9 fix segfault bug for in fix rigid/small found by regression testing 2017-10-20T16:56:06-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/aaf5e87c84f5747b86f0db0787e1de1211afe414 Merge pull request #703 from akohlmey/custom-rigid-body-generation 2017-10-20T14:08:15-06:00 Steve Plimpton sjplimp@sandia.gov Allow rigid body generation from custom properties https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2d0f5e277cf134c05258a769dc0f324e07a6c27c Merge pull request #704 from akohlmey/bond-gromos-bugfix 2017-10-20T14:06:35-06:00 Steve Plimpton sjplimp@sandia.gov Compute energy correctly for bond style gromos https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/260bbc6f9fea10f7cc215f059f36ff54b1d651e3 Merge pull request #702 from giacomofiorin/colvars-fix-the-fix 2017-10-20T14:06:15-06:00 Steve Plimpton sjplimp@sandia.gov Fix a Colvars error that was hidden by the previous segfault https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6b34a305286f2302b1cc263a4101289070f8c3f0 compute energy correctly for bond style gromos 2017-10-20T14:53:22-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/83c7d3a1d2e64ef5dfa14515ac6c596b1ad7627e update fix rigid documentation 2017-10-20T14:18:50-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/961b97637479837393a95e5146eb43012cf811c7 add/correct code to define rigid bodies with atomstyle/atomfile variables and... 2017-10-20T13:56:09-04:00 Axel Kohlmeyer akohlmey@gmail.com add/correct code to define rigid bodies with atomstyle/atomfile variables and via custom per-atom properties https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ac6434e4968181ca458349466e46bf1cfa0fa7ed add input examples for custom rigid body definition 2017-10-20T13:54:45-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f479f025897dcdad50ea4f488908a92062dfe5d9 Fix a Colvars error that was hidden by the previous segfault 2017-10-20T13:41:31-04:00 Giacomo Fiorin giacomo.fiorin@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e284545c5b996596cb49e03b8f5cd6c6c3604b8a added some documentation and reference example 2017-10-20T12:03:22+02:00 vishalkenchan vishal.boddu@fau.de https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e368acdaeb2251d28d7ff14b68d6b99e527fe817 Merge pull request #700 from giacomofiorin/colvars-fix 2017-10-19T11:45:36-06:00 Steve Plimpton sjplimp@sandia.gov Import segfault fix in Colvars module https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6e7504f15328576112eb80f26e68a31945e429aa Import segfault fix in Colvars module 2017-10-19T08:09:44-04:00 Giacomo Fiorin giacomo.fiorin@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/71c4edda51da7a11287eab3ccb48ef2a00c6bfb9 add coul/wolf/cs and born/coul/wolf/cs pair styles for CORESHELL package 2017-10-19T13:21:13+02:00 vishalkenchan vishal.boddu@fau.de https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/40147a7a64f781e12f2517caf8241bdd1b1e8767 Merge pull request #699 from lammps/doc-update2 2017-10-18T16:44:18-06:00 Steve Plimpton sjplimp@sandia.gov cross ref fix deform and new fix nvt/uef in doc pages https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f709a723cd9747ff3d70d20d0931685bf974530d cross ref fix deform and new fix nvt/uef 2017-10-18T15:26:15-06:00 Steve Plimpton sjplimp@sandia.gov https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6dd55e49cbc458237ed056b8e2ab1bddfa1644b3 Merge pull request #698 from lammps/doc-update 2017-10-18T15:24:54-06:00 Steve Plimpton sjplimp@sandia.gov small updates to recently added docs and rename of an example dir https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/281b1dc375712876d469dbbd0f1431d198120b55 small updates to recently added docs and rename of an example dir 2017-10-18T14:56:47-06:00 Steve Plimpton sjplimp@sandia.gov https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e93f8f88897552ca93f58907ca326065f0e13b4b Merge pull request #671 from danicholson/user-uef 2017-10-18T13:38:56-06:00 Steve Plimpton sjplimp@sandia.gov USER-UEF package for extensional flow https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/35f2cfa0bfafa064325a3eb8acc86d3627c6a33a Merge pull request #669 from urpedersen/master 2017-10-18T13:31:15-06:00 Steve Plimpton sjplimp@sandia.gov fix rhok - biasing long-range order https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e44196c01133ab7b8a5b43de2b2770c3d069f391 Merge pull request #694 from akohlmey/bond-gromos 2017-10-18T13:27:15-06:00 Steve Plimpton sjplimp@sandia.gov Add gromos bond style https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2fe1d1b904516fe8045fede5fc00f182ff459229 Merge pull request #697 from andeplane/fix_heat_bug 2017-10-18T13:26:19-06:00 Steve Plimpton sjplimp@sandia.gov Avoid checking region when not specified https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b1b4a52b14e255597d8af2237dc44fa9056ec950 Merge pull request #695 from timattox/USER-DPD_small_updates 2017-10-18T13:25:48-06:00 Steve Plimpton sjplimp@sandia.gov USER-DPD small updates https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/382de50341882991323b8b148a93a7a41f5e635c Merge pull request #696 from wmbrownIntel/intel-update-oct17 2017-10-18T13:25:07-06:00 Steve Plimpton sjplimp@sandia.gov Bug fix for unexpected case where a Intel bonded style is specified but there are no types https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7dfc6b7eab71b3e073e13e02b162c1d5f89d1ecc Merge pull request #688 from lammps/history 2017-10-18T13:24:36-06:00 Steve Plimpton sjplimp@sandia.gov refactoring of neighbor history https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/19eb5d389778f0137e4ad09d82318f90614f4540 Avoid checking region when not specified 2017-10-18T18:05:34+02:00 Anders Hafreager andershaf@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/17c17ac4099687e0766cefb1b655547307c4eea6 update multi-threaded neighbor list build for neighbor list refactor 2017-10-18T11:25:15-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/39ededd46cf7f4621fd584a37bdc77d8fd39dbe9 update respa/omp integrator style for neighbor list refactor 2017-10-18T11:24:44-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2c7528811d7f26ff1d256c59e8dca831946249ad update several pair styles to be compliant with refactored respa lists data s... 2017-10-18T11:24:12-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0966e14e73a74327f116ab4ab90cf2d69dd2d1fd more changes to rRESPA neighbor lists 2017-10-17T17:33:01-06:00 Steve Plimpton sjplimp@sandia.gov https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/bb141aaae04fd9cea31132725cb64d5709a16964 USER-INTEL: Bug fix for case where a bond/angle/dihedral/improper style is... 2017-10-16T22:51:56-07:00 Michael Brown michael.w.brown@intel.com USER-INTEL: Bug fix for case where a bond/angle/dihedral/improper style is specified, but there are no bond/... types and therefore no allocation. https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/374d619769c2de72953a1786d9512ad1410395c9 add gromos bond style 2017-10-16T14:57:12-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/59de1a71c8cd2a8d31067afb1f5dcca95d47c7f0 Merge branch 'history' of github.com:lammps/lammps into history 2017-10-16T14:37:30-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4c6779cb0d61c7db56c2cd6573554d1dbf82140d USER-DPD Kokkos: propagate the new neigh_modify options from efaa4c67 2017-10-16T13:37:27-05:00 Tim Mattox timothy.mattox@engilitycorp.com Propogate the <a href="/git/11930499/lammps/-/commit/efaa4c67109fb75e03699d2d7294005810fb776e" title="new neigh_modify exclude option, other SNAP changes" class="gfm gfm-commit has-tooltip" data-original="efaa4c67" data-link="false" data-link-reference="false" data-commit="efaa4c67109fb75e03699d2d7294005810fb776e" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">efaa4c67</a> changes to npair_ssa_kokkos from npair_kokkos that support the new neigh_modify exclude molecule/intra and /inter options. Note: npair_ssa_kokkos could inherit from npair_kokkos to avoid this kind of missed change. Unfortunately, inheritance from templated classes is both tricky and messy, and not worth the complexity in this case, IMHO. https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5fb5f70ec6847f971bcf74d40022a4f6cd4396ac update USER-OMP code for shear history neighbor refactoring 2017-10-16T14:37:20-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b0bba1976b33609f163b79e515c79bccdfa7f0e7 USER-DPD: remove unused coord2bin() variants, and add ISFINITE checks 2017-10-16T13:36:44-05:00 Tim Mattox timothy.mattox@engilitycorp.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f8f13d929fadcc2d4ec6bf38d86374821bfbd16a Merge pull request #693 from giacomofiorin/colvars-update 2017-10-13T17:25:06-06:00 Steve Plimpton sjplimp@sandia.gov Update Colvars to version 2017-10-11