lammps:8eeb92b82b542ff4e320494786f582472f1ab32c commits - 南方科技大学https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/8eeb92b82b542ff4e320494786f582472f1ab32c2019-05-11T17:04:57-04:00https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8eeb92b82b542ff4e320494786f582472f1ab32crestore original coeff() code with one modification. now setflag is only set...2019-05-11T17:04:57-04:00Axel Kohlmeyerakohlmey@gmail.comrestore original coeff() code with one modification. now setflag is only set for pairs of types that both are mapped to elements (and thus not NULL)
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c581e9349adea8176de5033b5febe534f3e4aeb8update interlayer potential examples for now requiring CH.rebo potential file...2019-05-11T16:46:21-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b2942cbafae5c8a1c85975b43535f0a4cfa4fa20correctly handle coeff statement for ilp/graphene/hbn2019-05-10T21:07:54-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c86359966cd06edbde0f985e40c0e8c25affa37berror out when offset flag is unset via "pair_modify shift no"2019-05-10T21:07:05-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/238382e0cac9516d8925fbfe2b665133665de5a7fix handline of setflag and coeffs to correctly work with system, that have e...2019-05-10T10:26:33-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/928600a878bf7dcebeacec0f4bd23912682e62f5Merge pull request #1452 from akohlmey/github-rebo-bugfix2019-05-09T12:18:05-04:00Axel Kohlmeyerakohlmey@gmail.com
Resubmission of REBO bugfix for easier reviewhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7b2d526f865c08cf819b89ce41aaf12f1a9f1c4cMerge pull request #1448 from akohlmey/collected-small-changes2019-05-09T12:17:19-04:00Axel Kohlmeyerakohlmey@gmail.com
Collected small changes and bugfixeshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/711cd4122fe0c561b445d52206f94c6d6e7efac3corrections to documentation and implementation of pair styles lj/mdf, buck/m...2019-05-07T19:52:00-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/45e6ed018e1eef09997fba7b0d0c2d5d25a83045correct formula for lennard/mdf potential2019-05-07T19:45:13-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8c193b8c426bffce94ae58cd280f4ae100f5db68add support for write_data/write_coeff to pair style lj/mdf2019-05-07T19:28:19-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/12f8834b806eefa86b72df95ca6b8abd8a6ab9d6correction of the incomplete implementation warning in write_coeff2019-05-07T19:26:57-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a87d8e124f777aaa61aa34850e25f29b773f1fa0Merge pull request #1449 from akohlmey/fix-print-w-variable-step2019-05-06T12:10:42-04:00Axel Kohlmeyerakohlmey@gmail.com
Support using a variable instead of a constant interval for fix printhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/cc3068813767108179cf8791e3a61c0bb090e601Merge pull request #1364 from stanmoore1/kk_binsize2019-05-06T12:10:08-04:00Axel Kohlmeyerakohlmey@gmail.com
Change defaults for KOKKOS packagehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b3f4e2055e6a1543f4acbbfa8fd1b022e6adf9d0Merge pull request #1438 from giacomofiorin/colvars-update2019-05-06T12:08:50-04:00Axel Kohlmeyerakohlmey@gmail.com
Update Colvars library to version 2019-04-26https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8212dca60965b511624e1924d6d4de1389c6a74eMerge pull request #1447 from ohenrich/user-cgdna2019-05-06T12:07:41-04:00Axel Kohlmeyerakohlmey@gmail.com
Homogenised label of relative hbond and stk strength to conform with oxDNA literaturehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/bac8b267dfa165a884ff32a353d54f1d51776f33make sure fix deform related variables are always initialized to avoid issues...2019-05-05T10:26:27-04:00Axel Kohlmeyerakohlmey@gmail.commake sure fix deform related variables are always initialized to avoid issues with the DomainOMP class.
https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c28cf9f742e1f2ba7ad73cea9a3515ec6587fb4fset variant flag in USER-INTEL (AI)REBO(-M) styles2019-05-04T20:53:43-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fd3eade6d27920a2f0080e213f0da6dcfb316794update reference date and examples for changes in REBO2019-05-04T20:42:36-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1214e6ea79c6a16be31a8b4e343b96c6b4838140align USER-INTEL versions of REBO/AIREBO with MANYBODY implementation2019-05-04T20:08:34-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c2b2be5d6f79681ab95d9f11d5bd565ad8cec104Merge branch 'master' into github-rebo-bugfix2019-05-04T19:09:52-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a7226bd93d9973e37f3e5bcf30fdb712c3debb1aremove unused variables2019-05-04T15:12:31-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a70f9c4f954667539526198026e5836a8cdfe14csupport using a variable instead of a constant interval for fix print2019-05-04T13:47:57-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3baf15ed6f91c105e451680e1e2e453c05b6a361apply bugfix from PR #1446 to allow switching from variable thermo output bac...2019-05-04T11:35:18-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d7dd78126c6423d6ecbdec7a93f505272fcbe0b3Homogenised label of relative hbond and stk strength to conform with oxDNA li...2019-05-02T16:48:41+01:00Oliver Henrichohenrich@users.noreply.github.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/97ce76e759af947a1e71fc35788b11a0358923a9Merge pull request #1444 from akohlmey/fix-intel-lrt-bug2019-05-01T16:19:37-04:00Axel Kohlmeyerakohlmey@gmail.com
CMake update for verlet/lrt/intel https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d7da1db745128ed3c10c78d73613f88a8ed6a492teach CMake that verlet/lrt/intel depends on KSPACE2019-05-01T08:20:24-04:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4f3c87f8c44ba2593a30421fb9e85097280770b0Merge pull request #1423 from akohlmey/next-patch-release2019-04-30T19:52:35-04:00Axel Kohlmeyerakohlmey@gmail.com
Step version string for next patch releasehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/02d5f17a18e05f42eb12eacc89963c9b543b739eMerge pull request #1437 from lammps/gpu_cmake_bugfix2019-04-30T19:05:59-04:00Axel Kohlmeyerakohlmey@gmail.com
Fix GenerateOpenCLHeader CMake utilitiy to avoid uncompilable CL codehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7e00acce53a5bd131d5a4f5cf1814889e8fb1cdbUpdate Colvars library to version 2019-04-262019-04-30T13:46:37-04:00Giacomo Fioringiacomo.fiorin@gmail.com
The following is list of relevant issues fixed and improvements:
Fix forces and missing output of runtime histogram for histogramRestraint
<a href="https://github.com/Colvars/colvars/pull/246" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/246</a>
Use fix_modify to add configuration to Colvars:
<a href="https://github.com/Colvars/colvars/pull/216" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/216</a>
Fix componentCoeff and name not working with orientationAngle components:
<a href="https://github.com/Colvars/colvars/issues/213" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/issues/213</a>
Fix 1-timestep offset with extendedLagrangian:
<a href="https://github.com/Colvars/colvars/pull/210" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/210</a>
Changes to improve compiler support:
<a href="https://github.com/Colvars/colvars/pull/203" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/203</a>
Fix ignored anisotropic cutoff3 for groupCoordNum:
<a href="https://github.com/Colvars/colvars/pull/202" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/202</a>
New dipoleMagnitude variable:
<a href="https://github.com/Colvars/colvars/pull/198" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/198</a>
Parser improvements:
<a href="https://github.com/Colvars/colvars/pull/196" rel="nofollow noreferrer noopener" target="_blank">https://github.com/Colvars/colvars/pull/196</a>https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7fbd409f5b6c3fa342a3e288a248121d4fbec2c6Fix GenerateOpenCLHeader CMake utilitiy to avoid uncompilable CL code2019-04-30T12:59:27-04:00Richard Bergerrichard.berger@temple.eduhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/faa0da99762d4d298afd3ab4d7c8840e4088ffacMerge pull request #1434 from ellio167/reaxc-multi-instance-fix2019-04-30T12:03:43-04:00Axel Kohlmeyerakohlmey@gmail.com
Reaxc multi instance fixhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e08080cae5949e25e4ef7a2b9431ac8b38fd3cd2Merge pull request #1436 from rbberger/gpu_opencl_bugfixes2019-04-30T12:02:52-04:00Axel Kohlmeyerakohlmey@gmail.com
GPU package bugfixeshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7b7f405d2cfc8b446dc9f095682bea542e836ff2Merge remote-tracking branch 'origin/master' into gpu_opencl_bugfixes2019-04-30T01:39:19-04:00Richard Bergerrichard.berger@temple.eduhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/66d94572e02487f5b9b6d98a34b8088d7730a56dAdd missing includes to OpenCL CMake builds of re_squared and tersoff kernels2019-04-30T01:37:27-04:00Richard Bergerrichard.berger@temple.eduhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8145c5028d01120321ff41ec9ab85aed50ee8792Fix OpenCL compilation errors due to bad comments in macros2019-04-30T00:44:12-04:00Richard Bergerrichard.berger@temple.eduhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0005ee3e936f899e64da93f7d3bc93e5cdf8af0dMerge pull request #1435 from akohlmey/collected-small-changes2019-04-29T20:19:50-04:00Axel Kohlmeyerakohlmey@gmail.com
Collected small changes for next patch releasehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8d9697dbf60d468917441dce6a1937361a25bf85Merge pull request #1420 from dsbolin/gran_mods2019-04-29T14:16:25-04:00Axel Kohlmeyerakohlmey@gmail.com
Updates and bugfixes to GRANULAR packagehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f05250901521b60abc773378abc3c73ee32cf86dMerge pull request #1421 from julient31/gneb_spin2019-04-29T14:14:58-04:00Axel Kohlmeyerakohlmey@gmail.com
Adding a GNEB implementation in the SPIN packagehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/97baee49319f82e484fab84d26596ee94f7117c0Commit2 JT 0429192019-04-29T08:23:57-06:00julient31julien.tranchida1@gmail.com- modified energy/torque tolerance for faster convergence in
examples/SPIN/gneb/skyrmion/in.gneb.skyrmionhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/96e51d11ad73e3cc837298bfcd75ad2b203156b3equilibrium angle must be converted to radians in angle style table2019-04-29T10:09:33-04:00Axel Kohlmeyerakohlmey@gmail.com