lammps:8c54fcd1b6c93d92f73167513f6f87c7d04e6643 commits - 南方科技大学 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/8c54fcd1b6c93d92f73167513f6f87c7d04e6643 2017-06-19T17:31:54-04:00 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8c54fcd1b6c93d92f73167513f6f87c7d04e6643 cleanup from aidan for fix reax/c/species and its KOKKOS version 2017-06-19T17:31:54-04:00 Axel Kohlmeyer akohlmey@gmail.com this version eliminates the need for the PBCconnected list and avoids having to access the spec_atom array for ghost atoms https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f5047ac3c7f9b13fcb01a0676e0722f97acf7eb1 augment fix shardlow check for ordering fixes to be KOKKOS compatible 2017-06-19T17:23:23-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3c329d170791699f01f500213c48b57cb7cff38d massive whitespace cleanup in USER-INTEL 2017-06-19T13:23:01-04:00 Axel Kohlmeyer akohlmey@gmail.com removed are: - DOS/Windows text format carriage return characters (^M) - tabs replaced with spaces (tabs are evil!!) - trailing whitespace https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b687d16177fe565dde1890a6076eab1becce0c0a insert C++ file format indicator comments 2017-06-19T13:03:23-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9d3e34e4922c6b2e137ec4f184475d2935d91359 add missing reference for lj/smooth/linear 2017-06-19T11:23:30-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8988b692a3923548cd2b5f745548c59a96235803 modified the documentation, first and last freeend can have different spring ... 2017-06-19T16:30:42+02:00 Emile Maras maras@linux.suse https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c97415aefab7cdb6f83a7aa7a57d5386ecc0e6a7 corrected the initial free end 2017-06-19T14:57:39+02:00 Emile Maras maras@linux.suse https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/cd88b31450c3366c126135638e77f0b68e6e1b93 same PR, also has cosmetic changes to new fix neb options 2017-06-16T17:02:05-06:00 Steve Plimpton sjplimp@sandia.gov https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9b9f6d6fe2f4559c7123a017171b2698bd3837d5 USER-INTEL upgrade from M Brown 2017-06-16T16:56:28-06:00 Steve Plimpton sjplimp@sandia.gov https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/bc0241576fa1e8b7ca3cd0f2b8b139d3a179c877 Merge pull request #532 from akohlmey/restore-heuristics-in-fix-shardlow 2017-06-16T09:46:58-06:00 sjplimp sjplimp@sandia.gov recover running USER-DPD with USER-OMP and suffixes https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8728a8ddae67b49e915632920b7e1ae60b8c5f90 restore heuristics for checking against integrators that broke after PR #499 ... 2017-06-15T15:16:50-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9aa450b832405124b55d4070d5ff317dd0671688 Merge pull request #528 from akohlmey/no_static_in_ring_comm 2017-06-15T11:13:07-06:00 sjplimp sjplimp@sandia.gov Refactor ring communication to no longer require static class variables https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0588c382f0a678c1dc14616c1541cee7bd9b74ec Merge pull request #513 from v0i0/bugfix-airebo-nconj-kronecker 2017-06-15T11:12:29-06:00 sjplimp sjplimp@sandia.gov Bugfix in AIREBO as reported in #59 by @KammIma https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d3c90f3c14dd7f15255692fcf584f966dcff4134 Merge pull request #510 from akohlmey/collected-small-changes 2017-06-15T11:12:14-06:00 sjplimp sjplimp@sandia.gov Collected small changes https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b62d526cc98d53c5c81d9839977dd8fc2dd1ffda Revert "avoid undesired negative forces for high particle velocities in granu... 2017-06-15T11:01:36-04:00 Axel Kohlmeyer akohlmey@gmail.com This reverts commit <a href="/git/11930499/lammps/-/commit/066123007cd9277d4c03669707cf34ab6c05bc06" title="avoid undesired negative forces for high particle velocities in granular models" class="gfm gfm-commit has-tooltip" data-original="066123007cd9277d4c03669707cf34ab6c05bc06" data-link="false" data-link-reference="false" data-commit="066123007cd9277d4c03669707cf34ab6c05bc06" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">06612300</a>. https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1a29048940e9b37f0c339a30ef380b35c46470c9 Merge pull request #531 from ohenrich/user-cgdna 2017-06-15T08:54:52-06:00 sjplimp sjplimp@sandia.gov Affiliation Update for USER-CGDNA https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0a6b3f87901c4ac2224d0a92c364978e599e8497 Merge pull request #527 from dstelter92/master 2017-06-15T08:54:22-06:00 sjplimp sjplimp@sandia.gov Added compute_scalar to fix_grem https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7227bc415d00acc0b8954860b70dfe19c940ef2a Merge pull request #526 from andeplane/vashishta_gpu 2017-06-15T08:52:13-06:00 sjplimp sjplimp@sandia.gov Implemented pair style vashishta in GPU package https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a4bc233d8631680e1d1c4ae3fbe7db4159d98475 Merge pull request #525 from akohlmey/user-tally-refactor 2017-06-15T08:51:24-06:00 sjplimp sjplimp@sandia.gov Refactoring of USER-TALLY computes to handle sparse/hybrid system for many processors plus bugfixes https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5c5b4ffadba93a7c7b6236fc1606bff327b45e69 Merge pull request #522 from akohlmey/tip4p-cleanup-refactor 2017-06-15T08:48:52-06:00 sjplimp sjplimp@sandia.gov Refactor and bugfix for some TIP4P pair styles https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/30177c4eaeb057d64e57bcc86be9d3774d3493b1 Merge pull request #521 from pastewka/17_dump_nc 2017-06-15T08:47:29-06:00 sjplimp sjplimp@sandia.gov Updated NetCDF dump style (dump netcdf) https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/178eff237bc3cbed2dd9c3aaa810cc24c18cc3ff Merge pull request #520 from stanmoore1/kokkos_update 2017-06-15T08:47:09-06:00 sjplimp sjplimp@sandia.gov Kokkos library update to v2.03.05 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/576b7f1d97b72dab700e0d06b5de75a2617e2f72 Merge pull request #519 from Pakketeretet2/USER-MANIFOLD-gaussian-bump 2017-06-15T08:46:55-06:00 sjplimp sjplimp@sandia.gov Some extensions/cleanup in USER-MANIFOLD https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/86369fec6bab382eee810d3dc2f84e2f0b2da78a Merge pull request #517 from akohlmey/select-rigid-reinit-option 2017-06-15T08:46:29-06:00 sjplimp sjplimp@sandia.gov Add `reinit` keyword to rigid body fixes https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/79341ac5d1628cc7e35080ebb8f18088b35b73f8 Merge pull request #516 from akohlmey/check-rigid-overlap 2017-06-15T08:44:05-06:00 sjplimp sjplimp@sandia.gov Implement check whether commands or styles try to change cached properties in rigid body integrators https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/66945294a9a7cde84dca86c86f9e0f2132d5fbb1 Merge pull request #515 from stanmoore1/remove_fences 2017-06-15T08:40:43-06:00 sjplimp sjplimp@sandia.gov Remove unnecessary thread fences in Kokkos package https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9a7207e34cb4bc2232478c06f7b11a2d42dadf8a Merge pull request #511 from akohlmey/add-compute-cnp 2017-06-15T08:38:05-06:00 sjplimp sjplimp@sandia.gov Integrate compute cnp/atom contributed by Paulo Branicio (USC) https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d41c617d1de060ac2db62b9b8b31962d4df26771 Merge pull request #509 from akohlmey/add-atomonly-npair-for-omp 2017-06-15T08:24:44-06:00 sjplimp sjplimp@sandia.gov add "atomonly" optimized neighbor list build styles to USER-OMP https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1ec9e588fff22efd6693b5d549b023ddfb0505ee Merge pull request #504 from andeplane/hexorder_fix 2017-06-15T08:24:25-06:00 sjplimp sjplimp@sandia.gov Using correct ndegree instead of nnn https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3c7417fb598d5b5b36f9f2da5c7299ef50eb0e83 Merge pull request #497 from lammps/add-user-reaxc-omp 2017-06-15T08:24:03-06:00 sjplimp sjplimp@sandia.gov Add USER-OMP compatible OpenMP support to USER-REAXC https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/34cfc7bd514b2f8d872257a7fe425e9088237be9 Merge pull request #490 from EmileMaras/NEB-Change 2017-06-15T08:23:04-06:00 sjplimp sjplimp@sandia.gov added several features to the NEB https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c98bb7fa5f2a821adadb45aa3d9fa926273af4fc Corrected minor bug in utility script 2017-06-15T12:57:44+01:00 Oliver Henrich o.henrich@epcc.ed.ac.uk https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/77ca68a2b4da74ff3ed0abf279d8d6d929de0f99 Changed affiliation 2017-06-15T12:52:19+01:00 Oliver Henrich o.henrich@epcc.ed.ac.uk https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fcc387f23201b90756d598fa476918a1cec0dd3b change ring communication API to no longer require a static variable pointing... 2017-06-14T17:01:06-04:00 Axel Kohlmeyer akohlmey@gmail.com change ring communication API to no longer require a static variable pointing to 'this' of the caller https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e7634a44f44263a481fd1b3d60ae2d76a5b071d9 updated thermo_modify in example 2017-06-14T13:11:54-04:00 dstelter92 dstelter@bu.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3214d639aa2e4bcfce48a8918570684eb9f44d42 removed unneeded .gitignore 2017-06-14T12:26:52-04:00 dstelter92 dstelter@bu.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0ad66ecb89dce218a842d609e455151826120b55 Added compute_scalar to fix_grem for easier output managment, updated example... 2017-06-14T12:18:22-04:00 dstelter92 dstelter@bu.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e139a7fd4549c422b57b4f47a3ee06ba2f38e44b Updated docs for vashishta/gpu 2017-06-14T13:52:03+02:00 Anders Hafreager andershaf@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d7646aeeed78d4827e93b631a4b3a299b98f4729 Fixed opencl error 2017-06-14T12:03:47+02:00 Anders Hafreager andershaf@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5f9341813ddf0d40326c10b358a50f4258661cc1 Removed debug output 2017-06-14T10:57:54+02:00 Anders Hafreager andershaf@gmail.com