lammps:629ead6348c129c5ef7b75f633f746f4cefa570e commits - 南方科技大学 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/629ead6348c129c5ef7b75f633f746f4cefa570e 2020-08-26T13:05:00-04:00 https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/629ead6348c129c5ef7b75f633f746f4cefa570e Merge pull request #2309 from lammps/doxygen-integration 2020-08-26T13:05:00-04:00 Axel Kohlmeyer akohlmey@gmail.com Add doxygen and graphviz processing into the documentation build https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/94db627ba563b536f489d36abd3a8dc6f00ee15f fix formatting issue 2020-08-26T12:09:43-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b4403de026410c0a7da376bc9934c40f279632d7 add false positive 2020-08-26T12:09:35-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8137ada8481b2ecaaa64cccbeab3cf099882042f Merge branch 'collected-small-changes' into doxygen-integration 2020-08-26T11:51:45-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/bdc952ac888a944708f9dc134d4dbad17f7475e6 Merge branch 'master' into collected-small-changes 2020-08-26T11:51:05-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f89a0f9fe35a0a5567981f7a7de0f796ce61d38f must not try to delete computes if they have not been created and their ids n... 2020-08-26T11:50:20-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c8af729701d9ec88baefa7ad33e25f52da131e90 Merge branch 'master' into collected-small-changes 2020-08-26T11:49:29-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4ad68c98a032483a7b021e056544c4739e7d9027 Merge pull request #2196 from jibril-b-coulibaly/mindlin_rescale 2020-08-26T11:42:06-04:00 Axel Kohlmeyer akohlmey@gmail.com Implement force history in Mindlin granular pair styles https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e2fd95d8ed58ae8aef34c7d47e95c66958494833 Merge pull request #2240 from jrgissing/bond/react-reset_mol_ids 2020-08-26T10:56:21-04:00 Axel Kohlmeyer akohlmey@gmail.com support molecule ID resets in fix bond/react https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1c10aa6a4df1d83de06b86cd59a66f2546f2e598 GIFs are only supported in HTML 2020-08-25T17:15:34-04:00 Richard Berger richard.berger@temple.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c256f2331fa36db61555b41ec6ab28da6437c4b7 JPG folder is no longer needed in HTML output 2020-08-25T16:59:39-04:00 Richard Berger richard.berger@temple.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ae5c0bd8d1f140674fa513346185b54811453c8e Remove targets to JPG images 2020-08-25T16:44:50-04:00 Richard Berger richard.berger@temple.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3a638440a46defcd923dbb152e1f26590a269563 Add missing PDF folder 2020-08-25T16:12:09-04:00 Richard Berger richard.berger@temple.edu https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/80e07c69f0033fdc835995ee7f85febf6a7484c3 add part of developer guide as to showcase the integration of the programmer ... 2020-08-25T15:07:09-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/df8fb26272086e727df778f3385a402242f1334d Refactor changes to documentation build 2020-08-25T13:41:31-04:00 Richard Berger richard.berger@temple.edu - Added CMake variables for readability - Moved Mathjax files to _static to avoid special copy logic - Moved JPG/lammps-logo.png to _static to avoid special copy logic - Removed dead CMake code https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/14b66d1f84752addf96bfec1e500bc7cf62205e2 tweak test tolerance of reax/c tests for running on ubuntu 18.04 2020-08-25T12:15:19-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/024e4c5f21c75189aa58db7e9edab01b0326d7f5 make formatting and doxygen decorations for utils functions consistent 2020-08-24T20:55:13-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3f685c346f33c841a081dd6c99cffef513c2b936 add doxygen integration with conventional and cmake doc build 2020-08-24T17:58:37-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/dc241abb85689b0aa780487c14cc0666cfffb6c5 Merge pull request #2305 from akohlmey/next_patch_version 2020-08-24T13:46:50-04:00 Axel Kohlmeyer akohlmey@gmail.com Update version strings for updated patch release https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/93e4ed97705b22b783a19f3c4f31c94c31ea566c Merge pull request #2304 from akohlmey/collected-small-changes 2020-08-24T11:43:42-04:00 Axel Kohlmeyer akohlmey@gmail.com Collected small changes for the next patch release https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7e1a3bd4d570391f33afe9487a7c4f6d24c3b7f7 Merge pull request #2302 from akohlmey/consistent-doc-headers 2020-08-24T10:52:09-04:00 Axel Kohlmeyer akohlmey@gmail.com Consistent subsection headers for commands https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/47a44732e7e9b438b70e50e9ce66fbed002d3c6c add test for fix restrain 2020-08-23T15:29:58-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8f5e8300ea4f21bbd21892d3ca27a7d9f92a3d95 fix typos in fix restrain docs 2020-08-23T15:29:49-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/10080079e3da86a39cc615a236242262710b91a9 ISO compliance 2020-08-23T11:44:48-04:00 Jacob Gissinger jrgiss05@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/63abb2dff919327995dc350b70f44800176d7eef fix broken reset_mol_ids command 2020-08-23T11:32:54-04:00 Jacob Gissinger jrgiss05@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/01dd80f35e7709bb15fcfeadbf6c6f9ceb960de6 bond/react: actually make reset_mol_ids the default 2020-08-23T11:21:43-04:00 Jacob Gissinger jrgiss05@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fb634658de30db2a678f479ce5289183abfdf721 add tests for a few more force manipulation fixes 2020-08-23T07:01:38-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c503bba00803a15b31ba5000488e1367d248b959 add custom pair style tests for reax/c and edip/multi 2020-08-23T06:44:33-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0fb8f6e779836bde5e393da170ea47f7d8e44320 add test for pair style momb 2020-08-22T23:15:20-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/66b17fd2ce743ba27ad455bb97d5b67a881b22ae dispersion only tests for buckingham 2020-08-22T23:03:20-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3def826dbe5746fb8ff66f19ade9567456193208 add more tests for variants using long-range dispersion pair styles 2020-08-22T22:55:15-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/f18d0507b3ecd9c8b67381eb1811abe1f040ef71 fix issues with lj/long pair styles when not using long-range for dispersion 2020-08-22T22:54:38-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c8f2634b44879a43f5b5c83f3dfe7770c39fa5c1 add tests for tabulated msm coulomb 2020-08-22T22:08:08-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/e78100bdba55937fb0b1935bdc4998b03e1889ee add (partial) tests for pair styles dpd and dpd/tstat 2020-08-22T22:00:13-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2907a10937dfbc2f7bdf019f67c160d760baaf6f update version strings for new attempt for a patch release 2020-08-22T16:42:39-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1879106cc3abaa25df9be74e56f33ac38e4c567c Merge pull request #2299 from rbberger/doc_file_size 2020-08-22T15:45:06-04:00 Axel Kohlmeyer akohlmey@gmail.com Avoids HTML doc pages from becoming too large https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9152a8e98ff41fa69c8ae0c81ed99211f12c9436 avoid division by zero in imaging code 2020-08-22T15:32:04-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2fd654f4fda297bec45a34e515593c1ac3aa6b88 silence compiler warnings about unused variables 2020-08-22T15:06:00-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/86153a0f772e8ab74765e8e0250df9f8a362f5b9 avoid division by zero in MathExtra normalize functions 2020-08-22T15:03:27-04:00 Axel Kohlmeyer akohlmey@gmail.com https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/9136f9b9c9aba76e46a2f42f8147c279f2b58c6a Merge pull request #2303 from rbberger/binary2txt_bug 2020-08-22T14:46:29-04:00 Axel Kohlmeyer akohlmey@gmail.com Fixes a bug in binary2txt