lammps:53f3df5bfc9419491d9ef65e8659f21aab1e2094 commits - 南方科技大学https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commits/53f3df5bfc9419491d9ef65e8659f21aab1e20942017-02-21T15:57:23-07:00https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/53f3df5bfc9419491d9ef65e8659f21aab1e2094Merge pull request #384 from lammps/another_neigh_refactor2017-02-21T15:57:23-07:00sjplimpsjplimp@sandia.gov
more neighbor list changes, some new optionshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/3dbbea342a3b5cb1439319d28fc618fd3b6c800dremove a debug print line2017-02-21T15:57:03-07:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/b70c670aac5663223f3aba340ff3f3b629c1415dMerge pull request #383 from stanmoore1/rshan_class2_kk2017-02-21T15:52:10-07:00sjplimpsjplimp@sandia.gov
Kokkos version of class2 bond, angle, dihedral, and improper from Ray Shanhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1d17cae407ff9d52b744fc3b5b62ecb15a712dfaMerge pull request #382 from timattox/master_kokkos_neigh_bugfix2017-02-21T15:51:35-07:00sjplimpsjplimp@sandia.gov
neighbor_kokkos.cpp: Don't call grow() on neighbor lists that are copieshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/429264a12bacb0d6ad64516284e5a41c39e74c0fMerge pull request #380 from hheenen/core_shell_documentation2017-02-21T15:50:53-07:00sjplimpsjplimp@sandia.gov
updated documentation and examples for coreshellhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/d001a093455b61f1a507e39178beb160fd1f3122Merge pull request #379 from ndtrung81/pppm-gpu-compute-group-group2017-02-21T15:50:28-07:00sjplimpsjplimp@sandia.gov
Fixed bugs with pppm/gpu when used with compute group/grouphttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/cb9d42da089640d7d6afe3bd00eb11ebdafd3687Merge pull request #378 from timattox/USER-DPD_ssa_update2017-02-21T15:50:07-07:00sjplimpsjplimp@sandia.gov
USER-DPD: performance optimizations to ssa_update() in fix_shardlowhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/7185ec92b3f0c13be1f42dd4ea3baad4aef7a3efMerge pull request #377 from stanmoore1/kokkos_update2017-02-21T15:49:50-07:00sjplimpsjplimp@sandia.gov
Kokkos library updatehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/1cd4c48cccdbbee0711b08449f260d05ce9f6e9enew SNAP potential for W2017-02-21T15:49:21-07:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ce20c7ffe911296641c1e2a52befc9cc7e356e78remove debug code2017-02-17T12:42:07-05:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4a80df3a99b87e7fd57e0b49e257918f024d3888more neighbor list changes, some new options2017-02-15T16:45:33-07:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/5f93fad012d85d5e18f86944a787fa6374b8b592Add copymode protection to class2 styles2017-02-15T13:56:16-07:00Stan Moorestamoor@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/ccaec315db31283fe89dc56883f9a405d3f2b6f6Updating docs for Kokkos class22017-02-15T13:00:33-07:00Stan Moorestamoor@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/c6c1852b3b1a298f4247f0fd496f626272dc9de7Fix a few issues with Kokkos class2 files2017-02-15T12:44:54-07:00Stan Moorestamoor@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/69a8e19dc5ebdca3f6d65a7f16f758f874e28c74Add files from Ray Shan for Kokkos version of class2 angle, bond, etc.2017-02-15T12:29:52-07:00Stan Moorestamoor@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/928947dcea24703c6a70268b000affa4c896d441neighbor_kokkos.cpp: Don't call grow() on neighbor lists that are copies.2017-02-15T11:49:34-05:00Tim Mattoxtimothy.mattox@engilitycorp.comThis corresponds to a bugfix from commit <a href="/git/11930499/lammps/-/commit/9161bd98bf091bab712a079d0f7e44eb32724749" title="fixed bug with pair hybrid/overaly and manybody potentials finding the right skip neighbor method" class="gfm gfm-commit has-tooltip" data-original="9161bd98" data-link="false" data-link-reference="false" data-commit="9161bd98bf091bab712a079d0f7e44eb32724749" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">9161bd98</a> on neighbor.cpphttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/48070011d9b77d79f1924014290d17385581c8b5update names in example, too2017-02-14T07:42:36-05:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0fb8dacc00f854cd070f6111996228d49ad1014fone more Finchham to Fincham change2017-02-14T07:41:05-05:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6b923476b96c297ec695624edd3f4b32bb5c1a57updated documentation and examples for coreshell2017-02-14T13:14:22+01:00Hendrik Heenenhendrik.heenen@mytum.dehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/20806dd86acf50f0dc8fb0e5da134f03e876b168Fixed bugs with pppm/gpu when used with compute group/group2017-02-14T00:26:55-06:00Trung Nguyenndactrung@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/90e5ae965d7f654039b190f2c6cb2c8545b5bbb2Add missing flags to Kokkos Makefile2017-02-13T11:19:46-07:00Stan Moorestanmoore1@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/15008c9d18896afc69674c6efc44b5df1525ada5USER-DPD: performance optimizations to ssa_update() in fix_shardlow2017-02-13T13:11:19-05:00Tim Mattoxtimothy.mattox@engilitycorp.comOverall improvements range from 2% to 18% on our benchmarks
1) Newton has to be turned on for SSA, so remove those conditionals
2) Rework the math in ssa_update() to eliminate many ops and temporaries
3) Split ssa_update() into two versions, based on DPD vs. DPDE
4) Reorder code in ssa_update_*() to reduce register pressurehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/33af7ab24874e8e1c985de3dcd11794822506dc5Remove merge line2017-02-13T10:59:22-07:00Stan Moorestanmoore1@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8f9b2aca06e7fe4029d0aa122b4015f810ff3553Removing unused files in Kokkos lib2017-02-13T10:53:51-07:00Stan Moorestanmoore1@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/383da816c221a48227e611f7add332f3b4a0b390Updating Kokkos lib2017-02-13T10:50:34-07:00Stan Moorestanmoore1@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/cb982f2f28ab92f8086377e0691bbeea6f9df598sync 13Feb17 patch back to GH2017-02-13T09:05:03-07:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/4843296d4e57b3838c11ecef9f136f5b69598937Merge pull request #372 from akohlmey/fft-cleanup2017-02-13T08:53:13-07:00sjplimpsjplimp@sandia.gov
simplify FFT3d code by removing support for outdated FFT librarieshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/2bdda8f6c013d186b80f44d07ff568d9e7345fc0patch 12Feb17 - change int to tagint for compute group/group2017-02-13T08:40:54-07:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/0068ef56168fa33098e3e268b2821a4008653314added molecule option to compute group/group command2017-02-10T09:25:32-07:00Steve Plimptonsjplimp@sandia.govhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/02b0e6cc55abeeeb0f97be90307f28cd3a3d91bcMerge pull request #375 from akohlmey/small-updates-and-fixes2017-02-10T09:23:51-07:00sjplimpsjplimp@sandia.gov
Small updates and fixeshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/fbb24c2406d338cf10ad5122b28a0253b0e63fd2Merge pull request #374 from agiliopadua/master2017-02-10T09:22:22-07:00sjplimpsjplimp@sandia.gov
Updated polarizer.py in USER-DRUDE to use coul/long/cshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/a5f830c40c6e2ea0c2aca42abfae98a8ecb0b112fix typo2017-02-08T14:33:45-05:00Axel Kohlmeyerakohlmey@gmail.com
(cherry picked from commit <a href="/git/11930499/lammps/-/commit/6410797697ddffbd5b47f526dcabd74f67ff6108" title="fix typo" class="gfm gfm-commit has-tooltip" data-original="6410797697ddffbd5b47f526dcabd74f67ff6108" data-link="false" data-link-reference="false" data-commit="6410797697ddffbd5b47f526dcabd74f67ff6108" data-project="218" data-container="body" data-placement="top" data-reference-type="commit">64107976</a>)https://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/8c074a363ae8480c01ef6c068bce0f7731a0b03fMerge branch 'master' into small-updates-and-fixes2017-02-08T14:32:44-05:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/27aca14094e918c62bd9477f5f1265ce726f71ecUpdated polarizer.py to use coul/long/cs2017-02-04T15:02:08+01:00Agilio Paduaagilio.padua@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/191453e1c73d91d82662a5e653200764f368eb8cMerge branch 'master' into fft-cleanup2017-02-03T16:53:10-05:00Axel Kohlmeyerakohlmey@gmail.comhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/207adc3968ff49effaf61f942e1e77b9bd92c9daMerge pull request #373 from stanmoore1/kk_more_bugfixes2017-02-03T14:45:31-07:00sjplimpsjplimp@sandia.gov
Fixing Kokkos per-atom energy/virial issueshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/84c517159d0701e945881bfa398cf0a59351d18eMerge pull request #368 from Pakketeretet2/kokkos_morse2017-02-03T14:45:07-07:00sjplimpsjplimp@sandia.gov
Kokkos morsehttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/6ca377436f8b4a0f9fdaaf4f6ddd155a829f0bc9Merge pull request #366 from rbberger/kokkos_lammps_bigbig_fix2017-02-03T14:43:33-07:00sjplimpsjplimp@sandia.gov
Fix data type of molecule array in npair_kokkos.hhttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/dc34a32602efc3e818c23020dd0220620bf34221Merge pull request #362 from ibaned/warnings22017-02-03T14:43:12-07:00sjplimpsjplimp@sandia.gov
fix Kokkos+kspace warningshttps://mirrors.sustech.edu.cn/git/11930499/lammps/-/commit/067119f6c6420174da8b8c61b08a7a2dae027a24Adding missing friend statement to pair_lj_class2_coul_cut_kokkos2017-02-02T15:21:30-07:00Stan Moorestanmoore1@gmail.com